The trick to turbo blowthru is to get all the pipes and hoses exactly as has worked for someone else, Ake's 99 on turbo-bike is a McXpress kit and they put lots of time into developing a system that worked, but checkout the probs some guys get when they do it a little different on
http://www.r1-forum.com/forums/showthread.php?t=45323&page=37I showed the turbo-bike setup to a guy doing blowthru on a early cbr600, he copied it , only difference was the carb bowl vents were part of the inlet rams when finished he brought it to me to set the mixtures, i checked and sent him home, i couldn't improve on what he had, 12:1 flat on boost and `13.2 off very little spiking or variation.
Efi is an easy conversion, my first blow thru wasn't as sucessfull in 2001 and i put later throttlebodies on my gsxr and a microtech fuel only ecu, same could be done with a microsquirt or megasquirt, cost a little for the parts but very easy to tune , still running well today.